rs108630012 SNP Detail

Summary

• ID
  rs108630012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133850551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGCAAGCCTG GTCTACAAAA TGAGTTCCAG GACAGCCAGG
  GCTACACAGA GAAACCCTGT CTGGAAACAA AACAAAAAAC AAAACAAAAC CAAAAAAAAA
  R
  AAAAACCCAA AAAAACAAAG TTCAAAGTAA GTATCCAATA GCTGCCATTG TTAGCTAGTG
  TGGTGAAACC TCTGCTCAAT GTGGGAGGGC CCAGAGCTGC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147518465	ENSMUSSNP3662823	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108630012					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133850551 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367738	regulatory region 367738			1870 bp downstream
Rr367739	regulatory region 367739			1022 bp upstream
Rr370577	regulatory region 370577			1215 bp downstream
Rr601567	regulatory region 601567			1308 bp distal
Rr601568	regulatory region 601568			1421 bp distal
Rr601569	regulatory region 601569			1071 bp distal
Rr601570	regulatory region 601570			454 bp distal
Rr601571	regulatory region 601571			581 bp proximal
Rr601572	regulatory region 601572			808 bp proximal
Rr601573	regulatory region 601573			874 bp proximal
Rr601574	regulatory region 601574			1357 bp proximal
Tssr39532	transcription start site region 39532			1405 bp downstream
Tssr39533	transcription start site region 39533			1380 bp downstream
Tssr39534	transcription start site region 39534			1270 bp upstream
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant