rs108611887 SNP Detail

Summary

• ID
  rs108611887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152666497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGCCATATT TAAGGTCACA AACCTTGAAC AAGTTACAGA
  CTCCAAGGCT CGTTGGGGAA AGCTCTTTGG TTATCAGCGT TGTTGTTGTT GTTGTTGTTG
  Y
  TGTTGTTGTT GTTGTTGTTG TTAGAAACAA TGAACTGATG CCCACAAAGT ACATTAAGCC
  TTCGGAGAGG AACTGGTATT GGGAGAGTTC GCACCAGCTT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145735352	ENSMUSSNP4452657	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108611887					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152666497 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	within coordinates
Rr420542	regulatory region 420542	389 bp distal
Rr420543	regulatory region 420543	265 bp distal
Rr420544	regulatory region 420544	1994 bp proximal
Tssr9422	transcription start site region 9422	1149 bp upstream