rs108594683 SNP Detail

Summary

• ID
  rs108594683
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84167632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAGTAGGT GGGTTAGGGA GCGATGGGGG AGGAGATCTT
  CGGAGGGAAA ACTAGGAAAG GGGATAACAT TTGAAATATA AAAAAAGAAA ATATATAATT
  W
  AAAAAATCTC AGCCTCAGCA TCCTCATCCA TAAAATGGGC CTAATAACTG CATCTTATGG
  GTTTGTTCTG GGAATTTAAT ACATCCAGCT ATGTGTTTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145349389	ENSMUSSNP5899233	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss322743765	CHEV_8_85964902	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108594683					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84167632 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr401003	regulatory region 401003			1407 bp upstream
Rr666229	regulatory region 666229			733 bp proximal
Rr666230	regulatory region 666230			1437 bp proximal
Scoc	short coiled-coil protein			Intron
				Noncoding-Transcript-Variant
Tssr82001	transcription start site region 82001			1421 bp downstream
Tssr82002	transcription start site region 82002			1439 bp downstream
Tssr82003	transcription start site region 82003			1475 bp downstream
Tssr82004	transcription start site region 82004			1518 bp downstream
Tssr82005	transcription start site region 82005			1580 bp downstream
Tssr82006	transcription start site region 82006			1605 bp downstream
Tssr82007	transcription start site region 82007			1653 bp downstream