rs108594652 SNP Detail

Summary

• ID
  rs108594652
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:92259985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTCCAA CCCCAGACAA
  CCTGCTGTAA TGATACATGT AATGTAGAGG ACAGAAATGA TGTGATTTCT CAGGCCACCA
  GTACTTGAGA CTGCCTGCCT TAAAGGTGTT TGCTTGTGTA AACAGCATTA CTTGTTTCTT
  TGGAACAAAA TAATTTCTCT TAAGAAAAGG TCTGAAACAC AGTAGCCTTT CCCAAGGCTG
  T
  TGCAACAGAG TGCTGACAGG AAAGGGGAAA GCCAACCAGC TCTAAAATAG GAGTTGGGAA
  ATAATGTTGG TGTTCAGAGA GACAAACCGA TTTGAAGCTC CATAGTTCTA TCTATCTTCT
  CTGAATTGAT CACTACTGAT CATCTCTTTC ATATCATCTC TTTCAGATCC TGAGAATTCA
  GCACTATGTC TTACCAACAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135481041	ENSMUSSNP6533726	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108594652					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92259985 () rs orientation: forward

Symbol	Name	Function Class
Sprr2e	small proline-rich protein 2E	Intron
Tssr30284	transcription start site region 30284	534 bp downstream