rs108591153 SNP Detail

Summary

• ID
  rs108591153
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102112405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACACAGCCTA ACAAATTTCA TCCTGAATTC CTGAATACAT
  GACGCAGGGG TTGATGTCTC TCCACCCAGC ACCCCAACAT ACCCCCAAGA TCACACACGC
  G
  CGCGCACACA CACACACACT TACAATTGTG CATAAAATCC AAGCCCTCAT TGTTTGCCAT
  CATTAAAAGC TCCAACCCGC ATATCCACAT GGCTCAAGAA C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135554853	ENSMUSSNP5857034	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs108591153					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102112405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13625	CpG island 13625	76 bp distal
Gm16160	predicted gene 16160	within coordinates
Rr582207	regulatory region 582207	1137 bp distal
Rr582208	regulatory region 582208	1034 bp distal
Rr582209	regulatory region 582209	407 bp distal
Rr582210	regulatory region 582210	within coordinates
Tssr34830	transcription start site region 34830	442 bp upstream
Vangl1	VANGL planar cell polarity 1	396 bp upstream