rs108550465 SNP Detail

Summary

• ID
  rs108550465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27157738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTTAT GTCTCTATGG
  AAAACCATGT TTTTGCCTCC TGGAGCTTAT CTGTATGATT GTACAATTTA CTCACAGGAC
  CTTTTTTTTT TTTAAGATTT ATTTACTATA CATAAGTACA CTGTAGCTGA CTTCCGTCGC
  ACCAGAAGAG GGCATTAGAT CTCATTACAG ATGGTTGGTT GTGAGCCACC ATGTTGCTGG
  R
  AATTGAACTC AGGACCTACG GAAGAGCAGT CAGTGCTCTT ACCCGCTGAG CCATCTCGCC
  AGCCCCCACA GGACTGTTCT TAACCTTCAG TTATTATAAA TTGTCTGATG CTCTGAATAA
  AGCTATTGTA TGAGACTCCT CATTTATTGG CTCCATTTTC CCAGATCTCA CAACATCTAA
  AGTACCAGAC AGCCCTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134702059	ENSMUSSNP2262629	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108550465					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27157738 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574344	regulatory region 574344	233 bp distal