rs108546373 SNP Detail

Summary

• ID
  rs108546373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39241342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAACTAC ATCTAAGGCT
  CTAAGACAGA AAGTGATATC AGGTGTGGGG AAAGATGAGC TCTAAGTGAT GAGCTGACAA
  ACCAGAATCC AACGAGTGCT GAGCATCCTG GCAGAGCAAG GAGCCTGCGC CATGGAGTTG
  AACCTTCATC CTGATATCAC TGCCTATGGG GCGCAATAGA CAGGACCCTG AACCTCAGGC
  Y
  CCCAGGGGTT CTTATAAGCT TTGCTAGCTT ACACAGAGGT ACTGGCAGCC AAGCTGTGTC
  TGCTTAGAAG AAGGACCCCA ATTCACACAG GTTCCGATAT GCCCAGGGGG CCCCTGAGAC
  TTACCCCCGA CCCCCACTCT ATTTTATTAC CATCTTTTCC GCTTTTCTGC CATTGACGGT
  ACAGGTAAGA TTCAGGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133127848	ENSMUSSNP4735554	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108546373					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39241342 () rs orientation: forward

Symbol	Name	Function Class
Gm26008	predicted gene, 26008	1436 bp downstream
Gm53067	predicted gene, 53067	940 bp downstream
Gm66721	predicted gene, 66721	798 bp downstream
Rr628990	regulatory region 628990	314 bp distal
Rr628991	regulatory region 628991	183 bp proximal