rs108546100 SNP Detail

Summary

• ID
  rs108546100
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144922846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAGGCAGAGG CAGGTGGATT TCTGAGTTCA AGGCCAGCCT
  GGTCTACAAA GTGAGTTCCA GGACAGCCAG GGCTATACAG AGAAACCCTG TCTCGAAAAC
  M
  CAAAAAACAA ACAAACAAAC AAACAAACAA ACAAACAAAA AAAAGAGATG AGCCTGGAAG
  GTATAGCTCA GTAGTAGAGT CCATGTGTGA TGCTGGATTA A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147848463	ENSMUSSNP4862235	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108546100					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144922846 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15267	CpG island 15267	935 bp distal
Rr398672	regulatory region 398672	1058 bp downstream
Rr604319	regulatory region 604319	1282 bp distal
Rr604320	regulatory region 604320	1907 bp distal
Rr604321	regulatory region 604321	781 bp distal
Rr604322	regulatory region 604322	1168 bp distal
Rr604323	regulatory region 604323	419 bp proximal
Tssr44481	transcription start site region 44481	1312 bp upstream
Tssr44482	transcription start site region 44482	1283 bp upstream
Tssr44483	transcription start site region 44483	1232 bp upstream
Vps13d	vacuolar protein sorting 13D	1271 bp upstream