rs108524198 SNP Detail

Summary

• ID
  rs108524198
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104547425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCTCGTGT TTTGCTTGTT TTTCTCAGCT
  GAATAAGAGA CTCTTGAATT TATTTATTCA TCATTCATTT ATTTTAATTA AGTGGTAAAT
  GGTGCTTCTA AGTCCAAGTC TTCGGGGAtg tgtatgtgtg tgtgtgtgtg tgtgtgtgtg
  W
  gagagagaga gagagagaga gagagagaga gagagagGAA AAAAGGAGAA GGAAGTGGTC
  AGTCCATCGC CTTAACCTTT CGGAAATTAA ATCCAAGGTG TACAGGCAGG AGGTATAGGC
  TTTACATAGT GAGACCCTTC TCAAAAAAAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135570113	ENSMUSSNP4032626	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320861275	CHEV_3_104444032	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108524198					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104547425 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	517 bp distal
Gm65697	predicted gene, 65697	1627 bp upstream
Rr367518	regulatory region 367518	1636 bp downstream
Rr582556	regulatory region 582556	1638 bp distal
Rr582557	regulatory region 582557	1431 bp distal
Rr582558	regulatory region 582558	1521 bp distal
Rr582559	regulatory region 582559	77 bp distal
Rr582560	regulatory region 582560	874 bp distal
Rr582561	regulatory region 582561	797 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	Intron
Tssr31045	transcription start site region 31045	1434 bp downstream
Tssr34884	transcription start site region 34884	1667 bp upstream
Tssr34885	transcription start site region 34885	1567 bp upstream