rs108523754 SNP Detail

Summary

• ID
  rs108523754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94564973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTT AGCTTTGCCT CAAGGACATG
  Y
  TGAGACAGGC AGGCGCATAG GAATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135506914	ENSMUSSNP3976295	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108523754					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94564973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13486	CpG island 13486	483 bp proximal
Gm15234	predicted gene 15234	1062 bp upstream
Gm65306	predicted gene, 65306	within coordinates
Rr580673	regulatory region 580673	161 bp proximal
Rr580674	regulatory region 580674	722 bp proximal
Rr580675	regulatory region 580675	1124 bp proximal
Rr580676	regulatory region 580676	1196 bp proximal
Rr580677	regulatory region 580677	1300 bp proximal
Tssr34401	transcription start site region 34401	1177 bp downstream
Tuft1	tuftelin 1	Intron