rs108517706 SNP Detail

Summary

• ID
  rs108517706
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105613915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCACACC AGGAGAAGCA TCTATAGAGG GTCTGTGGGT
  GTTCCTGGCA TGGGGATGGA TTTTCTAAAT CTTAACTGAT TTGCATTTTA TGGCACTCTA
  G
  GTGGGAGGTG GTGGGGGAGA AGACAGTCTG CTGATGTCAA GAGAATTTTT TAAGAAAGAA
  AAGAAATCTG CACTGAGCTG AGCTCCCAGA TTTTGATCT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863082	CHEV_3_105509517	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108517706					SNP	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss135577618	ENSMUSSNP4716317	ENSEMBL	ENSEMBL_Sanger	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105613915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	1063 bp distal
Inka2	inka box actin regulator 2	Intron
Rr367522	regulatory region 367522	within coordinates
Rr582756	regulatory region 582756	1990 bp distal
Rr582757	regulatory region 582757	1131 bp distal
Rr582758	regulatory region 582758	730 bp distal
Rr582759	regulatory region 582759	within coordinates
Rr582760	regulatory region 582760	1033 bp proximal
Tssr31079	transcription start site region 31079	1919 bp downstream
Tssr31080	transcription start site region 31080	1902 bp downstream