rs108500033 SNP Detail

Summary

• ID
  rs108500033
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106488774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCACAGAT TATGTGGTTT
  GAGGGAATAA TTTAACATCT TTGGATCTGA ATGCCAATGA AAGGAATGTC TACATAGCAA
  ATGGGCTACC ATGGGCTACA CAACAAGTCC AGGACTAGGC TACATACTGA CTGAGATACT
  GTCTCAAAAC AAAACATAAT TGGGGTCCTG TGGAAGTAAG AAAGATGCCT TGTAGCCCTA
  S
  AGAAGGGGGA ATGGGGAGAG GTGGGATATC TTCAGGCTCT AGGCCCTGAA ATCCTATGGC
  TCTTTGGGGT ATTGAAACAG ATTACACTAG ACAAAACACC CCCAGGCCAG CCCATACTAG
  GACATGAGTG TTTGCCCTAG GAATGACCCA CCCACACAGG CCCCAGAGGC ATGTAGCACT
  ATCCTCCTTT GCAGTTAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147169552	ENSMUSSNP222079	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108500033					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106488774 () rs orientation: forward

Symbol	Name	Function Class
Rr398365	regulatory region 398365	281 bp downstream
Rr596781	regulatory region 596781	1894 bp distal
Rr596782	regulatory region 596782	229 bp distal
Rr596783	regulatory region 596783	429 bp distal
Rr596784	regulatory region 596784	798 bp proximal
Rr596785	regulatory region 596785	1522 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron