rs108494707 SNP Detail

Summary

• ID
  rs108494707
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120016375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAAACT TTGTGAAGAG
  TGCACATACC ATCACTGTTG ATTAGATGGG TGAGGGTAAA CAAAATATAT TCCATCCTTC
  TCTTCTTCAC AACAACTAAA GCCGCATGCT CATCTCCAGT TTCCAAACAA GTACTTTGGC
  TGCAAAGATG GGCTGCCTAC TAAATAAAAC CCAGGATCAG AGCGAACCTC TTTGCTTTGC
  S
  GGAAACTTAA CGGGAACGGG AGGTGTAGGG GGCGGGGAGA GGCGGGTGAC AAGCATGGGA
  GGAGGTCGAG TTCGAAGATA TTCTACATCT TTAATCTTTG ATTACAAACT TGAGAGGACA
  TAGTTGACTT TTGCCTCTAT ATTTGAGTAA AAATTATTTT CCTTTTGTTT TCTTATACCC
  TGCCTCGGTG GCTCAGTAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133594588	ENSMUSSNP4095789	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108494707					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120016375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17916	CpG island 17916	433 bp distal
Cpgi17917	CpG island 17917	348 bp proximal
Gm66353	predicted gene, 66353	within coordinates
Rr399863	regulatory region 399863	434 bp downstream
Rr399864	regulatory region 399864	190 bp upstream
Rr637759	regulatory region 637759	1265 bp distal
Rr637760	regulatory region 637760	582 bp distal
Rr637761	regulatory region 637761	within coordinates
Rr637762	regulatory region 637762	371 bp proximal
Tssr58518	transcription start site region 58518	487 bp upstream
Tssr62751	transcription start site region 62751	1534 bp upstream
Tssr62752	transcription start site region 62752	1500 bp upstream
Tssr62753	transcription start site region 62753	1438 bp upstream
Tssr62754	transcription start site region 62754	1364 bp upstream
Tssr62755	transcription start site region 62755	1275 bp upstream
Tssr62756	transcription start site region 62756	1051 bp upstream
Tssr62757	transcription start site region 62757	859 bp upstream
Tssr62758	transcription start site region 62758	778 bp upstream
Tssr62759	transcription start site region 62759	715 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	742 bp upstream