rs108489712 SNP Detail

Summary

• ID
  rs108489712
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106716331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGACAGTA GAGGGCCCAG
  GTTCGGTTCC CAACACCCAT GTGGTGGTTC ACAACTATAA CTCCAGTTCC ACAGGATCCA
  ACCTGCCCTG GTATATGAGC AACAGGCACA CATGCAGTGT ACATACATGT GCAGACAAAC
  ACCCAAACAC ATTAAATTAA AAACAAAACA AAAAAACAGA ACTCACATGA TGGCTCCTTG
  G
  GTATGATCTC TTGCTGCCAG GCCTGACAAC CTGGTTGTGA TCCCCAGGGA GAGGAAGAAC
  CGGTTTCCAG CAAGTGAATT CTTCAGGAGC AAACAGCAGC ATTTCCCCAC TCCCAACAAT
  AAACAGTGAG AAATAGTTGT TGTTGTTGTT GTTGTTTTTA TTTAAAAGGA AAAAAAGAAG
  GAGGAAACAG GCTCATGGAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147172880	ENSMUSSNP5440121	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108489712					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106716331 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	616 bp upstream
Gm69780	predicted gene, 69780	137 bp downstream
Gm70282	predicted gene, 70282	707 bp upstream
Rr376973	regulatory region 376973	within coordinates
Rr596849	regulatory region 596849	468 bp proximal
Rr596850	regulatory region 596850	718 bp proximal
Tssr38192	transcription start site region 38192	587 bp upstream
Tssr42651	transcription start site region 42651	243 bp downstream
Tssr42652	transcription start site region 42652	453 bp downstream
Tssr42653	transcription start site region 42653	464 bp downstream