rs108488149 SNP Detail

Summary

• ID
  rs108488149
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30241784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAAATA ATAGCATGAA
  GCGAGCCTGA AACCTGAGGA CACAGGGTTA TTGATACTCA TGCATACGCT TCACAACTGC
  TAACTAACGG AGGAAGTGCT ACTGCCCCAT CCAGACCTAT GAAGGAAGGA GCTTCAGGAG
  ACCAGAATCA GTGCTCAGTA AATAGATACC ATGTGCTCAG CTCCTTCTTC CCAAGAAGTG
  K
  GTCTTTCTTC CTTCTAAGGC CATTACTAGG GAGTTCTATT TAACAACAAA ATATGAATTC
  CACAGTGGAT TCCATGAGGC AGAACACTGC TAGATCTATC TACCTGTGGC CTGGAAACAC
  TGGGAAGATC TATGAAGCTA CAGAAGACAG AGAGAGACAG AGATATCCAG ACAGATAGAC
  CAAAGAATAT CTCAAGACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134729745	ENSMUSSNP2408624	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108488149					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30241784 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574734	regulatory region 574734			388 bp proximal