rs108483328 SNP Detail

Summary

• ID
  rs108483328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTTAAA CCAGAAACAA
  ATAGAAGGGA CAGCTGGACT CTGAACTGGG TCCCCTGTTA ATTTTTCACA GAACTGTGAA
  CAGATTAAAG TCCCCTCACA GTATAGCCTT TCCACCGTGA TCCCAAATGG TAAATTCAAA
  CAGACACACA CTTAAAATGG CCCAGCAGAG CCTCAAAAGA CTCCACATTG GCCCCAAGAC
  Y
  ACTGGGTCCC AGTTAGGATT TATCCAAGTC ATTTTGGGTC CCCAAATTAC TCCCTCACAT
  GTATCTGTGC TGGGCCCATG CTGGCTCCCA GCCACCAGCA CAGAGATGGC CCACACAGGG
  AAACAATAGC AATGAAAGGG TCTTTCTGTC TCTTTGCTTA AATGGGAGGA AGCCTGTGAC
  ATTTTCCAAG TCCTGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147543383	ENSMUSSNP2084014	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108483328					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1534 bp distal
Rr398589	regulatory region 398589	1966 bp downstream
Rr601980	regulatory region 601980	1853 bp distal
Rr601982	regulatory region 601982	within coordinates
Rr601983	regulatory region 601983	1657 bp proximal