rs108479336 SNP Detail

Summary

• ID
  rs108479336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48172709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTCTTCC TGGGACACAG GCCTCACACC TTGGAATAAT
  CCCCTCTTCC TCTCCCTCCT CTTCCTCTCC CTCCTCCTAC ACCTCCTCTC CCTCCTCTTC
  Y
  TCCTCCTCCT CCTCCTCCTC CTCCTCCTCC TCCTCCACAG AAAATGGAGC CCTCAAGGCA
  TCAGTCCAGC CACTGAGCGT TCTCCCAGGC TCGGGCGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325406942	CHEV_17_47998733	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108479336					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48172709 () rs orientation: forward

Symbol	Name	Function Class
Rr392692	regulatory region 392692	71 bp upstream
Rr528160	regulatory region 528160	1319 bp proximal
Tssr145062	transcription start site region 145062	491 bp upstream