rs108479083 SNP Detail

Summary

• ID
  rs108479083
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69281706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTAAGAAAAT ACTTAAAAGT ACCGAATCAT ATAGCTGATA
  GTATTTTTAA TTTATTTATT ATCGTGTCAG GACAGGAAAT TTTCTCTCTC TGTATATTTG
  K
  ATATGTGTAT ATCAAGATTA GAGGACGATT TTGGGTGTCA TTCCCCCACC CCGTTTTTTA
  TTAAATTTGT TCTTTGACAA TTTTATATGT GGATATAACA C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135267009	ENSMUSSNP1573078	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108479083					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69281706 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578170	regulatory region 578170	1435 bp distal
Rr578171	regulatory region 578171	44 bp distal
Rr578172	regulatory region 578172	462 bp proximal
Tssr29541	transcription start site region 29541	599 bp downstream