rs108466516 SNP Detail

Summary

• ID
  rs108466516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20019815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAACCAAA GGACAGAATT
  CCACATTGCA TCATTTCTTA TCTGTTTTTC TGAACCGAAT AATTCTACTA ATAGAACACC
  TGGCTACCAT GCTTTTTCCT TTTTACAGCA CCATGGTATA CTAGAGTATT AACATCAACT
  TTCAAAAGGC CATAGTAGGC TTGTAATTTT GTTAAAGAAA AAATTCTTAC CTTTTAATGA
  Y
  ACATGCTCTG ATATTTAGTA GTTAAATATG TCTGACATCT GCTTTAAAAT AATATATGGC
  TGAAGATAAA GTTGAGTGGG TTCTGGAGAA AAACAAGAAT GGCTTTCAGT TCACCATTAT
  TGTTAAAGCT GGGCTGACAG GTTCACGGGG AATCCACCAA TACTTAGATG AATGCAGAAG
  TTTGAAAATT TCTCAAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671353	ENSMUSSNP1535958	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108466516					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20019815 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cp	ceruloplasmin			Intron
				Noncoding-Transcript-Variant
Rr574045	regulatory region 574045			581 bp distal
Rr574046	regulatory region 574046			40 bp distal
Tssr28543	transcription start site region 28543			694 bp upstream
Tssr28544	transcription start site region 28544			712 bp upstream