rs108459474 SNP Detail

Summary

• ID
  rs108459474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122211380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCAGTGG AGCTTGGAGC
  TCAGCAGAGC TGAGCAGGGT TCCTGCAGTC AGCTGATAGT GCATTGTGAC TGCTGTAGTG
  CAGTCTTGGG AGAGTTTACT GTCGTGACTC TGCTGTTACA CGTGGCTGTT TACGAGCTTG
  CACCCACAGA CAAGGCCAGA GCTTTTGAAT ATTGTGCGAT AACGTCTTCT GCCGGCTCGG
  W
  CTCACAATCC ACTGGAACAA ACTTAATGTT CTGGAACCAG GTCACCTTTT AAAGGCGACT
  TCAAAGCAAA ACTAAACCAG TGGCCCTTTC ACCAGTGACA TCGGTGAAGG GTTAAGCGGG
  GTTATTGTGA AGGTAATACG CACCCGAGCA CAGGTCAGGG CTCTGCTTTT AAAGTTTGTA
  GTTGTATTTA TTCTGTTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135741255	ENSMUSSNP161667	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108459474					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122211380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13768	CpG island 13768	1822 bp proximal
Rr397985	regulatory region 397985	1850 bp upstream
Rr584325	regulatory region 584325	1080 bp proximal
Rr584326	regulatory region 584326	1610 bp proximal