rs108454878 SNP Detail

Summary

• ID
  rs108454878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102030074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGG CTACTGGTGT AGATGTGAAA
  R
  TCAGTAGTTC CCAACTGAAG TCAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135554097	ENSMUSSNP6501553	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320854498	CHEV_3_101926681	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108454878					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102030074 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	1404 bp distal
Rr582182	regulatory region 582182	1655 bp distal
Rr582183	regulatory region 582183	413 bp distal
Rr582184	regulatory region 582184	558 bp distal
Rr582185	regulatory region 582185	493 bp distal