rs108440785 SNP Detail

Summary

• ID
  rs108440785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106488481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAGAATGT TGACGGTGAG CAGAGTGGTG GGGGAAGGAC
  TCATTTGTAA ACCTTGATAT TATCTCACAT GGAGTTATTC CGCCTCTCTG GTCTCAGTGT
  Y
  CCTGGATATA GAATAAGGAG ATCAATAACA GTGTTGAGGA AAAGACTGGA GGCTAGGGCC
  ATGGAAGTAG AAGTTGAACT CCCAGCTCTG TCATTCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147169532	ENSMUSSNP1239714	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108440785					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106488481 () rs orientation: forward

Symbol	Name	Function Class
Rr398365	regulatory region 398365	within coordinates
Rr596781	regulatory region 596781	1601 bp distal
Rr596782	regulatory region 596782	within coordinates
Rr596783	regulatory region 596783	136 bp distal
Rr596784	regulatory region 596784	1091 bp proximal
Rr596785	regulatory region 596785	1815 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron