rs108432672 SNP Detail

Summary

• ID
  rs108432672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126342101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCCCGGA GGATGGCTTC TTCTGTGGAA ATCAAGGTAG
  AGGTGATCAA CACAAGAAAA GCCAGCTGGC TACAGCACCT ACTTGCCAAC CTTCTAGCTG
  Y
  CCTGGACTGA GAAGGATAAG CAAGCATCTT TGGAGATGCC ACCTGTTTTC CCAGAGATTA
  AACGATCGGC AATGGGGAGA CATCACAGAG GGAACTGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147505136	ENSMUSSNP918996	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108432672					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126342101 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564346	regulatory region 564346	905 bp distal
Rr564347	regulatory region 564347	345 bp distal
Rr564348	regulatory region 564348	within coordinates
Rr564349	regulatory region 564349	416 bp proximal
Tssr632	transcription start site region 632	152 bp downstream
Tssr19934	transcription start site region 19934	1105 bp downstream
Tssr19935	transcription start site region 19935	185 bp downstream
Tssr26039	transcription start site region 26039	469 bp upstream
Tssr26040	transcription start site region 26040	456 bp upstream
Tssr26041	transcription start site region 26041	439 bp upstream
Tssr26042	transcription start site region 26042	387 bp upstream
Tssr26043	transcription start site region 26043	323 bp upstream
Tssr26044	transcription start site region 26044	249 bp upstream
Tssr26045	transcription start site region 26045	111 bp downstream
Tssr26046	transcription start site region 26046	450 bp downstream