rs108431000 SNP Detail

Summary

• ID
  rs108431000
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70318840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGCTGC TAACCAGCCA
  GCCTAGCTGG AAACGCAAGC TTCTGGTTCA CTGAGCGATC CTGTCTCAAG GGAATAAGGC
  AGTCAGTGAC AGGGGAAAAC GCTTGCCATC TTTCTCTGGC CATTACATAT ACCTACACAG
  ACATACACAC CTGCACATTC ATATGCATAC ACACATGCAC ATACCACACA CTGAAAAAAT
  W
  AATTAAGATA AATCTTAAAA GAATATTCAT CTTCCGACAG GTGGTTGTGG CTCACACCTT
  TAATCCCAGC ACGTAGGAGG CAAAAGCAGG CCGATCTCCA GAGTTTGACG CCAGCCTAAT
  CAACACAGCT TGTTCCAGGC AGCAAGGGCT ACACAGAGAA ACCTTGTCTC AAAACAAACA
  AAACTATCCA TTTCTAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146495752	ENSMUSSNP100638	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108431000					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70318840 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdk5rap2	CDK5 regulatory subunit associated protein 2			Intron
				Noncoding-Transcript-Variant
Rr593869	regulatory region 593869			1209 bp distal
Rr593870	regulatory region 593870			1274 bp proximal
Rr593871	regulatory region 593871			1699 bp proximal