rs108427295 SNP Detail

Summary

• ID
  rs108427295
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153567865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTTGAA CTCACAAAGA
  TCCTCCTGCC TCTGCCTCCT TCGTGCAGGG ATTAAATGCA TTCACCATGC TCAGTGTTTG
  TATGAATCTT GGTCTTTGAC TCTATTTACA TAACATGGAG CTTTCCATGT CCCTTTCTCC
  TGACCCCTTA ACTCATTTAG GTCCACAGAA GACACAAAAG GGGGCAGGGA GCCAGTGAGA
  S
  GGCTTAGTGG GTAAAGGAGC TTGCTGTACA AGCCTGCTGG CCTGAGCTTG ATCCTCAGGG
  AAAGAGAGAA CAGACTACAA AATTGTTCTC TGACCTCCAA ACACTGTGGG ATGTACGTCC
  ATACACATTA AATATACATG CACACATTAG CAGTAAATAC ATTTTTAAAG AAGAGTTAGG
  GTGGCATTGG AAGATGTATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148002271	ENSMUSSNP4750950	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
ss320564634	CHEV_2_153551681	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108427295					SNP	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153567865 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Gm74761	predicted gene, 74761	147 bp downstream
Rr567733	regulatory region 567733	1117 bp distal