rs108408320 SNP Detail

Summary

• ID
  rs108408320
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138611182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTCAGGTATG GCTGCATTAA GTGGACCTAA CAGATGGAAG
  GTCCAGGTGT CTGTTCAGGT GCCCATCCAG GTGTCCATCC AGGTGTCTGT GCAGGTGTCT
  G
  TGCAGGTGCT CATCCAGGTG TCCTTGCAGG TGTCTGTGCA GGTGCCCATC CAGGTGTCCA
  TGCAGGTGCC CATCCAGGTG TCCATGCAAG TGTCTGTGCA G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147659832	ENSMUSSNP6844503	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108408320					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138611182 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15156	CpG island 15156	1391 bp distal
Pla2g2e	phospholipase A2, group IIE	1057 bp downstream
Rr603039	regulatory region 603039	297 bp proximal
Rr603040	regulatory region 603040	611 bp proximal