rs108405946 SNP Detail

Summary

• ID
  rs108405946
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115994224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAATGCT GAGATTAAAG
  GCATGTGCCA CCACGCCCGG CCTTCTGGCT GGTTTTTTAA GTCATTTATT TTTGAGATAG
  GGTCTCATTA TGCAGATCAG GTTGGCCTCA AACTCTGAGC TCCATCTGCT TCTGCCCCAC
  ACCCTCTAGT GCTGGGGTTA GAGTATGCTA CTACATCTGG CCTGCTAAAG ATTTTTAGTG
  G
  ATGGTAATTA ACCAGATTTT GAAATTGTTA GCCCCTTTGC CCTATGCAAT CCTAGAGTGT
  GATGTGCACA GGCTCTCAGG GTGCATTCTA CGATTCTACT AGGCTAGCTC ATAGTAAGCT
  AAAGGTATGC CCACAGCATC TTTAAAGCTG TCATGAAAGG TATCCCTTCC TGTCACAACC
  CCTGGGTTGA GGCTGGGTGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133574527	ENSMUSSNP1378672	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108405946					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115994224 () rs orientation: forward

Symbol	Name	Function Class
Rr637138	regulatory region 637138	520 bp proximal
Rr637139	regulatory region 637139	798 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	1348 bp downstream