rs108395283 SNP Detail

Summary

• ID
  rs108395283
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123025870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCAGCAG GGTTTGTGTT TCACTTACAT ATCAAAATTC
  CCCTTGGAAT GTTAAGCAAT CTGGATGCCA GGGTCAACCT CAAAGTCACT AACTCAGGAC
  W
  AGAAACAGGC CATAAGATTA TTATTTTTTT TTTAAAGATT TATTTATTGT TATATGTAGG
  TACACTGTAG CTGTCTTCAG ACACACCAGA AGAGGGCAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135760806	ENSMUSSNP4545826	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320918204	CHEV_3_122935139	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108395283					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123025870 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			1827 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant