rs108383467 SNP Detail

Summary

• ID
  rs108383467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108807632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTATAT GTTGAAAAAC
  AAAAAACAAA ACAACAACGA CAAAACCAAA GCCTTCCTAC TTTATTTCAG CAGTGTGGGG
  GAATTGAACA CACGAAGTTC TTTATAGCTG AGCTAAATTT CAGTCTTTTT TTTTTTCCTT
  TTTTTTTCTT TTTTTTTTTT TTGTTTTTCG AGACAGGGTT TCTTTGTGTA GCCCTGGCTG
  Y
  CCTGGAACTC ACTTTGTAGA CCAGGCTGGC CTCAAACTCA GAAATCCGCC TGCCTCTGCC
  TCCCGAGTGC TGGGATTAAA GGCGTGAGCC ACCACGCCCG GCTTATTTTC TCCCAGTTTC
  TTTGGGAGGC GGGGGGGGGG GGGGGGGATA GTTATGTGAA GTAACATCGG TCCTTTTTGG
  GATTATAGGA AGGGAATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133510115	ENSMUSSNP2635621	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108383467					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108807632 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9430088B20Rik	RIKEN cDNA 9430088B20 gene			1175 bp upstream
Cpgi17816	CpG island 17816			1030 bp distal
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr636214	regulatory region 636214			1987 bp distal
Rr636215	regulatory region 636215			1501 bp distal
Rr636216	regulatory region 636216			1099 bp proximal
Tssr58105	transcription start site region 58105			1950 bp downstream
Tssr58106	transcription start site region 58106			1927 bp downstream
Tssr58107	transcription start site region 58107			1527 bp downstream