rs108372727 SNP Detail

Summary

• ID
  rs108372727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99568240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCTGACTTGT CTGAAACAGT GCCTTCTGAA ATGGACATCT
  TGGTGTCTTC TTTGAAAGAG CCAAACTGAC TGACGTCTAT TTGTGTTGGA GATACATCTC
  Y
  TCCCAATTTC CTTTCATCCA AAGCTAGAGC TGATTGAGAA CTCATGGTTT CAACATCACT
  GGTTTTCTTT TCTGGACCAA AGTCTTCCTT TATGGGTATG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145068582	ENSMUSSNP4216234	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108372727					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99568240 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-NonSynonymous
Tssr123696	transcription start site region 123696	1831 bp upstream
Tssr123697	transcription start site region 123697	1640 bp upstream
Tssr123698	transcription start site region 123698	1490 bp upstream
Tssr123699	transcription start site region 123699	1406 bp upstream
Tssr123700	transcription start site region 123700	1359 bp upstream
Tssr123701	transcription start site region 123701	1334 bp upstream
Tssr123702	transcription start site region 123702	1315 bp upstream
Tssr123703	transcription start site region 123703	1263 bp upstream
Tssr123704	transcription start site region 123704	1207 bp upstream
Tssr123705	transcription start site region 123705	906 bp upstream
Tssr123706	transcription start site region 123706	679 bp upstream
Tssr123707	transcription start site region 123707	487 bp upstream
Tssr123708	transcription start site region 123708	289 bp upstream
Tssr123709	transcription start site region 123709	117 bp upstream
Tssr123710	transcription start site region 123710	1076 bp downstream
Tssr123711	transcription start site region 123711	1282 bp downstream
Tssr123712	transcription start site region 123712	1512 bp downstream
Tssr123713	transcription start site region 123713	1727 bp downstream
Tssr123714	transcription start site region 123714	1767 bp downstream
Tssr123715	transcription start site region 123715	1800 bp downstream
Tssr123716	transcription start site region 123716	1864 bp downstream