rs108361263 SNP Detail

Summary

• ID
  rs108361263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143007397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCAGCCCG TCTAACAGAA CTGGAGTAGT CAGTGAGATA
  CCCTGCCTCA AAAATAGATG GAAAGTGACT GAGAAGAAAA TAGACAATAT CAGCCTTATA
  Y
  ATGGGCGAGT ATACAGGTCC ACACACCCAC ATATGAAAAT ATACATATAC ATCACACACA
  CACACACGCT GAATATGTTC CTTTTTTAGA TGGTACAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147778681	ENSMUSSNP5645441	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108361263					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143007397 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604183	regulatory region 604183	1522 bp distal
Rr604184	regulatory region 604184	335 bp distal
Rr604185	regulatory region 604185	425 bp distal
Tssr44446	transcription start site region 44446	1912 bp upstream