rs108360913 SNP Detail

Summary

• ID
  rs108360913
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172459825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATATTGA TTCTATGTTG AAATAATATT TTTGACTTAT
  TGGATTAGTA CAAAATTAAC TTCACCTGCT TCTTTTTCAT CTTTTTCGTT TTTTGTTTTT
  K
  TTTTTTTTTT AAAACGTAGC TGCTAGTAAA ATTTAAAATT ACAAGTGTGT CTCTATGACA
  TTTGGACCTC TAGTAAAAGG GCTTTGAACT GATTCCGTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120015546	PARCsnp_1.10915	PARC_SEQ	INBRED	f	SNP			G	T
ss146197847	ENSMUSSNP3185122	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320126693	CHEV_1_174562389	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs108360913					SNP	T	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172459825 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	Intron
Gm35601	predicted gene, 35601	771 bp upstream
Rr396594	regulatory region 396594	635 bp upstream
Rr423641	regulatory region 423641	36 bp proximal
Rr423642	regulatory region 423642	500 bp proximal
Rr423643	regulatory region 423643	694 bp proximal
Rr423644	regulatory region 423644	799 bp proximal
Rr423645	regulatory region 423645	1547 bp proximal
Tssr10245	transcription start site region 10245	806 bp upstream
Tssr15247	transcription start site region 15247	533 bp downstream
Tssr15248	transcription start site region 15248	557 bp downstream
Tssr15249	transcription start site region 15249	673 bp downstream