rs108359293 SNP Detail

Summary

• ID
  rs108359293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150278843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGATCA GCAAGGGCCC
  TTAACTACTG AGCCATCTCT CCAGCCCTGA TTTTGTTTGT TTTGTTTTTT TGTTGTTATT
  GTTGTTGTTT TACTTTGTTT GTTTTGTTTT GTTTTGTTTT TTAAAGAAGA AAATGAAAGT
  GGCTTCTGGT GTAAAAAGTA TATTTTGTTG TTGTTTTCCC CCGTGTTTAG GTTTGAGTTT
  R
  TTTTGGTTCA GTTTTGGTGG GGTTTTTTTT TGTTTTGTTT TTTTGAGACA GGGTTTCTCT
  ATGTATAGTC CTTGCTGTCC TGGAACTCAC TATGTAGACC AGGCTGACCT TAAACATGAG
  AGACCTGCCT TTCTTTGCCT CCTAAGTGCT GGGACTAAAA GTGTGCACCA CCACTGACTG
  GCTTGGTTTT GTGTTTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148049917	ENSMUSSNP870527	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108359293					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150278843 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			167 bp distal
Rr605220	regulatory region 605220			253 bp distal
Tssr40386	transcription start site region 40386			1708 bp upstream
Tssr44724	transcription start site region 44724			1870 bp upstream
Tssr44725	transcription start site region 44725			1828 bp upstream
Tssr44726	transcription start site region 44726			1801 bp upstream
Tssr44727	transcription start site region 44727			1753 bp upstream
Tssr44728	transcription start site region 44728			611 bp upstream
Tssr44729	transcription start site region 44729			1693 bp downstream
Tssr44730	transcription start site region 44730			1723 bp downstream
Tssr44731	transcription start site region 44731			1756 bp downstream