rs108354594 SNP Detail

Summary

• ID
  rs108354594
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:98777581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAACAAAT TTTTATGAAG TAGCTCCACT GAGCCCTGCA
  CACTGCTAAC AGCTCAATGC CTTTCTTTTC ATACTACATC CCACATGAAC CCCCCCCCCC
  C
  CACACACACA CACACTACCA GACTTTATAA TTTAGGGCTG AACTATAACA TTTGGACACC
  CTACCGCAAC TGGTACCTGC CCTGCTGTGT CCACCAGAT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148461722	ENSMUSSNP5948061	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108354594					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98777581 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rhebl1	Ras homolog enriched in brain like 1			Intron
				Noncoding-Transcript-Variant
Rr404611	regulatory region 404611			1595 bp upstream
Rr509203	regulatory region 509203			1884 bp distal
Rr509205	regulatory region 509205			1566 bp proximal
Tssr136315	transcription start site region 136315			1520 bp downstream
Tssr136316	transcription start site region 136316			1555 bp downstream
Tssr136317	transcription start site region 136317			1661 bp downstream
Tssr136318	transcription start site region 136318			1688 bp downstream