rs108344715 SNP Detail

Summary

• ID
  rs108344715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCAGCCA CAAAGATGGT
  CACTGTCTGC CATGTGGGGG TCCCGAAGTA GGAGAGGAGG CCTTCCTGAG AACAGAGAGA
  TGGGTGTGAC TTCAATACCA AATTGCAGGG GGAAGAAAGA GATTTCCCAT GAAGGGATGC
  TAAGGCGCTC CTGGGCTTAT AACCCCAGCA CTCAGGAACC CTAGGAAGGA GGGCTGTAAG
  Y
  CTAATGCCAA CCTGTGAAGT TTATTGAGAT CCTCACTCAG AAAACAAAAC TTAGGGCCAG
  CAAGATAGCT CATGCACAAA AGGACACACA CGCGCGCGCG CGTGCGCGCA AATGTAAAAA
  GTATCCCACT CAACCCACGA TCCCAAAATG GGAAAACAAA ACAAAATGAA AACAAAACAA
  AACAAAACAA AATAAAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149135524	ENSMUSSNP5669788	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108344715					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111526 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bax	BCL2-associated X protein			Intron
				Splice-Site
Cpgi19061	CpG island 19061			1968 bp distal
Gm10252	predicted gene 10252			1802 bp downstream
Gm73429	predicted gene, 73429			639 bp upstream
Gm73431	predicted gene, 73431			452 bp downstream
Rr380754	regulatory region 380754			670 bp downstream
Rr646450	regulatory region 646450			1728 bp distal
Rr646451	regulatory region 646451			1993 bp distal
Rr646452	regulatory region 646452			1083 bp distal
Rr646453	regulatory region 646453			650 bp distal
Rr646454	regulatory region 646454			153 bp distal
Rr646455	regulatory region 646455			937 bp proximal
Tssr66542	transcription start site region 66542			1002 bp downstream
Tssr72399	transcription start site region 72399			1156 bp upstream
Tssr72400	transcription start site region 72400			1125 bp upstream