rs108342771 SNP Detail

Summary

• ID
  rs108342771
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102059174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTTGTC ACTGTGCATC
  AGGTGTCTCA GCGCCATAAC TAATTCTCTA GGCAAGGGTC TGTTGTTTGA TGTTTTTGTA
  GGCTGGCAGT TTGGCAAGGC CTACATCAGC AGTTCTCAAC CTTTGGGTCA TGGCCCCTTT
  GGGGAAGGGT TGAATGATCT TTCTCAGGAA TCTTCTAAGA CCATCGGAAA AAATACAGAT
  R
  TCTACATTAT GATTCATAGC AGAGCAAAAT TGTGTTATGA AGTAGCAACC AAAATAAATG
  TATGGTTGGG AATCACCACA ACATTAGAGA CTGTATTAAA GGGTCACAGC CTTAGGAAGG
  TTGGGAACCA CTGTTCTACA TGAATGAATT CACCAGGGAA CGCACCTGGC CATGTCTGAA
  GGCTCAGAGA GACAGAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135554469	ENSMUSSNP4113070	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108342771					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102059174 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582191	regulatory region 582191	1552 bp distal
Rr582192	regulatory region 582192	341 bp proximal
Vangl1	VANGL planar cell polarity 1	1725 bp downstream