rs108335021 SNP Detail

Summary

• ID
  rs108335021
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73070692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTAAATGCAC CCACTCTCCT GCATTGTCAG TCACCAAAGG
  CCTGGCCCCC CCAGTGGTCA GTGGGATTGT TAAAGAAAAC AATCCCAGGG GAACAGCATA
  S
  CAATGGCGGG GCCATTGGCC CGAGCCACAC GCTGGACAGA CTGTGGAAAA GCCAGGCCCA
  GGCAAAAAGT CCTTCACTCT CCATCAGATG AAAGTGCCAT G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145052023	ENSMUSSNP457328	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108335021					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73070692 () rs orientation: forward

Symbol	Name	Function Class
Gm44645	predicted gene 44645	1306 bp upstream
Rgma	repulsive guidance molecule family member A	1045 bp downstream
Rr648938	regulatory region 648938	1128 bp distal
Rr648939	regulatory region 648939	1248 bp distal
Rr648940	regulatory region 648940	within coordinates
Rr648941	regulatory region 648941	1112 bp proximal
Rr648942	regulatory region 648942	1354 bp proximal
Rr648943	regulatory region 648943	1707 bp proximal
Tssr72937	transcription start site region 72937	1595 bp downstream