rs108334776 SNP Detail

Summary

• ID
  rs108334776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCAAGT CCCTGCTAGG
  AGCCATCTAG GAGATGCCAA AAAGTAGCAG GTGATTTTCC TCAGATGGTT CATCCTTGGA
  TTAAAATCTA CAGCAGACTT ACTCCAGCAG GCAAGTTCCA GCAGGATTTC ATTTTAGGAA
  AGATTCCTTC TATTAATATG CTTTTCTTCT TATTATTAAC TATATATAAC AATCACTAAT
  Y
  ATTAGCTCCT TTGAGCAGAT CTCTGTGGAT CAATGAAGAT GTACAGTCTT GTAGTGATGC
  TATATAGACA AATAGGCGAA TTCTTAATTC TTAACAATGA TTCATTAAGA GTTCCTAAAA
  TTATATTAGG AATTATTAAG ACTTTTATAA TAGGACTGCT ATTAAATGTT TACTGATATC
  AAAACTGCAA TGAGAATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146960020	ENSMUSSNP2953957	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108334776					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033188 () rs orientation: forward

Symbol	Name	Function Class
Raet1a	retinoic acid early transcript 1, alpha	1320 bp upstream
Raet1e	retinoic acid early transcript 1E	1253 bp upstream
Rr428833	regulatory region 428833	790 bp proximal
Rr428834	regulatory region 428834	1308 bp proximal
Tssr92677	transcription start site region 92677	1106 bp upstream
Tssr92678	transcription start site region 92678	1180 bp upstream
Tssr92679	transcription start site region 92679	1232 bp upstream
Tssr92680	transcription start site region 92680	1277 bp upstream