rs108327153 SNP Detail

Summary

• ID
  rs108327153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689003 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T GCTGTCCCTG AGTTTTCAAC CTTAGACATT CTGACTGTTG
  TGAGGTGGAA TCTCAGGGTT GTTTTAATTT GCATTTCCCT GATGACTAAG AATGTTGAAC
  R
  TTTCTTTAGG TGCTTCTCAG CCATTCGAGT TTCCTCAGTT GAGAATTCTC TGTTTAATTC
  TGTTCCCCAT TTGGGTTTTT GTTGTTGTTG TTCTTGTTGT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133124802	ENSMUSSNP4011595	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108327153					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689003 () rs orientation: reverse

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1902 bp proximal