rs108323816 SNP Detail

Summary

• ID
  rs108323816
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115015185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAAACTA CGAATGGTTA
  TTAAACCATT TAATTAATTA AATCATCCTT ATATTGATTT TCTTTTTGCT TTTTGTTTTT
  TTTTTTGAGA TAGGGTTTCT CTGTGTATCC CTGTCTGTCC TGGACTAACT CTGTAGACCA
  GGCTGGCCTC AAAGCATTCA GACAGGGTTT CACTGTGCAA CAGCCCTGGA ATTTGCTATA
  T
  AGACAAAGCT GGCCTCGAAC TCACAGCCAT CCACCTGCCT CTGTCTCCAA AGGGCTAAGA
  TGAAAGCATG AACTACCTCA TTCACAACCT TGTGGAGCTA TCACCTCTAG TGCCAAGTTG
  TAGGAGCATT TGAAGATTTA GAAAAACAAA AGAAATGTAA AACATGCCGG CCCAGGGGAT
  TGTGATTGCT AGAAACTGAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133572130	ENSMUSSNP4365033	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108323816					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115015185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17868	CpG island 17868	179 bp distal
Gm68165	predicted gene, 68165	854 bp downstream
Rr399845	regulatory region 399845	124 bp downstream
Rr636913	regulatory region 636913	44 bp distal
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog	348 bp upstream
Tssr62499	transcription start site region 62499	343 bp upstream
Tssr62500	transcription start site region 62500	966 bp downstream