rs108320622 SNP Detail

Summary

• ID
  rs108320622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82960062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTTATG GGGAAAGACA
  GGAAATAGAA GTTAGCCACA GCAACCCGTG CTGAACGGTA CAGAGTGAGA GGAGGCTTTT
  GCTTCGTGAC TTGGGTACCA ACCTTCGGAG GGAAATGGAC ATTAAAATGA AAAGGGCTTC
  TGAACTTGCA ACTAGGGGCT GAGTAGCAAT GAGTGCTTGC ATCGCACACC TTGCACCTGG
  Y
  GTATTTCAAA TGTATCCGTT GAGTGAGTTT ATAAGTATAT GCATGGATAA ACAGATAAGA
  CCTATCAGTG ACTCTGCTTG TTTACTCGGG CATGCGATTG CAAACGTTAC AGTCATTAGT
  CTTTTTAGCA TGCTTCTCTT AACTACAACT GAAGAGTAAG AGTTGAAGGC CAAGCTGAAC
  TTCTGGCACA AACATCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135410451	ENSMUSSNP3507109	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108320622					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82960062 () rs orientation: forward

Symbol	Name	Function Class
Rr578826	regulatory region 578826	743 bp proximal
Rr578827	regulatory region 578827	1142 bp proximal