rs108312954 SNP Detail

Summary

• ID
  rs108312954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22032757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTACTACG GAGGCTTGGT
  GATGGGAGTT CACAGGTTCT TCTAACAGAA ATGCCACGTT ATAGCAATAT TTAAAGAGAC
  TGGTAAATAT AAGCTATGTG CTGTGTAGTT TCATGTCAAC TTGATGTAAG GTAAAATCAT
  ATGTGAGGAG AGACCCTTGG TTTTAAAATG CTTCCATAAG ATAAGAATGG AAACAAGCCT
  R
  TAGGGCATTT TCTCTACTAC TGTTCAATGT GGAGGGCCCA GCCCCTTATG GTGGTCCTTT
  TCTATAAGAC AGCAGGCTAA GCAAGTCATG AGGAGAAATC TAGTAAGCAG CGCCCACCCA
  TGGTCTTCGC ATCAGTTTCT GCCTCCAGAT GCTTGCCCTC TTTGAGTCTT GTCCAGACTT
  CTTTCAAAGG ACAAGCAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146959946	ENSMUSSNP5715954	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108312954					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22032757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1541 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1751 bp upstream
Raet1e	retinoic acid early transcript 1E	1684 bp upstream
Rr428833	regulatory region 428833	1221 bp proximal
Rr428834	regulatory region 428834	1739 bp proximal
Tssr92677	transcription start site region 92677	1537 bp upstream
Tssr92678	transcription start site region 92678	1611 bp upstream
Tssr92679	transcription start site region 92679	1663 bp upstream
Tssr92680	transcription start site region 92680	1708 bp upstream