rs108303596 SNP Detail

Summary

• ID
  rs108303596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94978613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTAAAAT GTGTTGACCT
  ATATATTTGT TCAAAATCTT TCAAGGTGTC TAAGGGAATT TACAAAGAAA ACAGCATTAA
  GCCAGATAAA ATCTTGATAC CATAGAGGCA AAGGCAAGAG AGCCAGGAAT TAAAAAATGG
  CATTGAGGGC TGGAGAGATT ATAGCTCAGA GGTTAAAAGA ACATGCTGGT CTTCCAGAGG
  W
  CCTGAGTTCA ATTCCCACCA ACCACATGGC AGTTCACAAC CTTTCTTTAA GAAATGGCTT
  TGAGCCGGGC GGTGGTGGCA CACGCCTTTA ATCCCCACAC TTGGGAGGCA GAGGCAGGCA
  TATTTCTGAG TTTGAGGCCA GCCTCGTCTA CAAAGTGAGT TCCAGGACAG CCAGGGCTAT
  ACAGAGAAAC CCTGTCTCGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135509808	ENSMUSSNP5700212	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108303596					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94978613 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha			Intron
				Noncoding-Transcript-Variant
Rr580809	regulatory region 580809			1930 bp proximal