rs108292923 SNP Detail

Summary

• ID
  rs108292923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18618350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCAGTA CTTGGGGTGT
  GGAGACAAGA GGAGCAGGAG CTGAAGGTCA TCCTTGGCTA AACAGAGTTC AAAGTCATCC
  TAAGCTATGT GAGACACTCA TACAGGAATA CATTCTTAAA AGGAACTTTT GTTAGCCCCA
  CCTGCAGGAA GTAAGTTTGT GCCAAAGCCC TGGGCCCCTT ACCTATGCAA GTTCCTGTTA
  R
  GTTACACCAT CCCCCACTGA GATCTAAGCC TTGGAAACCC CAGGAAACAA CTGAATGTCC
  AGTCCTTTGT GCCCTTCCTG ATGAGAGAGC CTCTCTCCCC ACCTACTGAC ACTTAGCAAA
  GGCTCCATCA CGGCCCCACC TCTGGTTAAA GGAGGAAGCT GGGTCTGGGT CGGAAAGTCC
  CGCCCAGGTG TGAAGCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148463473	ENSMUSSNP6330997	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108292923					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18618350 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pglyrp1	peptidoglycan recognition protein 1			Intron
				Noncoding-Transcript-Variant
Rr642924	regulatory region 642924			within coordinates
Tssr64752	transcription start site region 64752			254 bp upstream