rs108280609 SNP Detail

Summary

• ID
  rs108280609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTATCT GTGCTGGGCC
  CATGCTGGCT CCCAGCCACC AGCACAGAGA TGGCCCACAC AGGGAAACAA TAGCAATGAA
  AGGGTCTTTC TGTCTCTTTG CTTAAATGGG AGGAAGCCTG TGACATTTTC CAAGTCCTGA
  GGTGGTCCAA GTCCTGCCCT TGCTCATCCG GACACCCTCA GGCACTGGCT CAGACCTGGA
  R
  CCTGTGCTCA GGAACCTGGT CACAGTCATG CCTAGGGGTC TCAGTTTCTA CTCTGATGCT
  CATGAGCATG GGAGCACAGA CAGATCTGGG AGGAGGAGGA AGAGGAAGAC GAAGAGGAGA
  GAAAGTGTTT ATTCCGGGAG GTCCTACAGC ACCTTGCTTC CAACTTTGAA AGGCAAGACG
  TTCCTGCCCT GTGCTCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147543411	ENSMUSSNP2547547	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108280609					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002725 () rs orientation: forward

Symbol	Name	Function Class
Rr601982	regulatory region 601982	2 bp distal
Rr601983	regulatory region 601983	1400 bp proximal