rs108279782 SNP Detail

Summary

• ID
  rs108279782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102112321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC TAGCACACAG CCTAACAAAT
  Y
  TCATCCTGAA TTCCTGAATA CATGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135554850	ENSMUSSNP1327935	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320854833	CHEV_3_102008928	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108279782					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102112321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13625	CpG island 13625	within coordinates
Gm16160	predicted gene 16160	within coordinates
Rr582207	regulatory region 582207	1053 bp distal
Rr582208	regulatory region 582208	950 bp distal
Rr582209	regulatory region 582209	323 bp distal
Rr582210	regulatory region 582210	within coordinates
Tssr34830	transcription start site region 34830	358 bp upstream
Vangl1	VANGL planar cell polarity 1	312 bp upstream