rs108277302 SNP Detail

Summary

• ID
  rs108277302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143027189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTAGGCTCTG AACCCACAAT GGTGAAAGGA GAGTCCCGAT
  TGATTCCTGT ATGTTGCCCT CTGACCAGAC AGCGAGCACA CACACACACA CACACACACA
  Y
  ACACACACAC ATACACACAC ACACTCGCGC ATGCACACGG TAAAAATAAG TTACAGAGAA
  CTTAACAATG AACGGTCCCT ACGTGTCCCA ATGAAGGTGA C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147779127	ENSMUSSNP1216692	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108277302					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143027189 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	1055 bp upstream
Rr604190	regulatory region 604190	1167 bp distal
Rr604191	regulatory region 604191	565 bp distal
Rr604192	regulatory region 604192	497 bp proximal
Rr604193	regulatory region 604193	1949 bp proximal
Tssr44447	transcription start site region 44447	1329 bp upstream
Tssr44448	transcription start site region 44448	1137 bp upstream
Tssr44449	transcription start site region 44449	1108 bp upstream