rs108275278 SNP Detail

Summary

• ID
  rs108275278
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138356402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATGGAC ATTTAGGTTG
  AGCTTGTATC TTGGTGGTTA TGATTAATGA TGCAATAAAT AAGCCTGGGT TGGAGGTGCC
  CCTTGATAAA CCAATTTCAT TTCTTTTGGT TATATACCCA GAAGTACCCA GAAGTAGGAC
  TACTGGATCA AATATTGTGT GCTCTCTCTC TCAATATTAC CTTTTTTTTT TTTTTTTTGG
  K
  TTTTTTGAGA CAGGGTTTCT CTGTATAGTC CTGGCTGTCC TGGAACTCAC TTTGTAGACC
  AGGTTGGCCT CGAACTCAGA AATCCGCCTG CCTCTGCCTC CCAAGTACTA GGATTAAAGG
  CATGTGCCAC CACACCCGGC TCTCTCAGCA TTTCTTAAGA GAAGAAGGAT TTGTTTTGGC
  TTGGGTTCAG CAGGGTTCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135955797	ENSMUSSNP1608139	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108275278					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138356402 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	801 bp proximal
Rr586177	regulatory region 586177	1157 bp proximal