rs108271027 SNP Detail

Summary

• ID
  rs108271027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22032881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGGTAA AATCATATGT
  GAGGAGAGAC CCTTGGTTTT AAAATGCTTC CATAAGATAA GAATGGAAAC AAGCCTATAG
  GGCATTTTCT CTACTACTGT TCAATGTGGA GGGCCCAGCC CCTTATGGTG GTCCTTTTCT
  ATAAGACAGC AGGCTAAGCA AGTCATGAGG AGAAATCTAG TAAGCAGCGC CCACCCATGG
  Y
  CTTCGCATCA GTTTCTGCCT CCAGATGCTT GCCCTCTTTG AGTCTTGTCC AGACTTCTTT
  CAAAGGACAA GCAGTGATTT AGAAGTGTAA GCCAAATAAA CATTTCCTCC CCAAGTCCCT
  GCTAGGAGCC ATCTAGGAGA TGCCAAAAAG TAGCAGGTGA TTTTCCTCAG ATGGTTCATC
  CTTGGATTAA AATCTACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146959970	ENSMUSSNP4959126	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108271027					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22032881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1417 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1627 bp upstream
Raet1e	retinoic acid early transcript 1E	1560 bp upstream
Rr428833	regulatory region 428833	1097 bp proximal
Rr428834	regulatory region 428834	1615 bp proximal
Tssr92677	transcription start site region 92677	1413 bp upstream
Tssr92678	transcription start site region 92678	1487 bp upstream
Tssr92679	transcription start site region 92679	1539 bp upstream
Tssr92680	transcription start site region 92680	1584 bp upstream