rs108266066 SNP Detail

Summary

• ID
  rs108266066
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GATGCCAAAA AGTAGCAGGT GATTTTCCTC AGATGGTTCA
  TCCTTGGATT AAAATCTACA GCAGACTTAC TCCAGCAGGC AAGTTCCAGC AGGATTTCAT
  T
  TTAGGAAAGA TTCCTTCTAT TAATATGCTT TTCTTCTTAT TATTAACTAT ATATAACAAT
  CACTAATCAT TAGCTCCTTT GAGCAGATCT CTGTGGATCA A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146960000	ENSMUSSNP4982962	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108266066					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1178 bp proximal
Cpgi1374	CpG island 1374	1966 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1388 bp upstream
Raet1e	retinoic acid early transcript 1E	1321 bp upstream
Rr428833	regulatory region 428833	858 bp proximal
Rr428834	regulatory region 428834	1376 bp proximal
Tssr92677	transcription start site region 92677	1174 bp upstream
Tssr92678	transcription start site region 92678	1248 bp upstream
Tssr92679	transcription start site region 92679	1300 bp upstream
Tssr92680	transcription start site region 92680	1345 bp upstream